Procyc

From FreeBio

History of changes to 10.5.5 from 10.5.4

Added Lysine biosynthesis VI

(setq *cyano-orgs* '(WH8102 SS120 PPAN PCORE NATL2A NATL1A MIT9515 MIT9313 MIT9312 MIT9303 MIT9301 MIT9211 MED4 CC9902 CC9605 AS9601))
(loop for org in *cyano-orgs*  
   do (so org) 
   (import-pathways '(pwy-5097) *metacyc* (current-kb) :overwrite? t :quiet? nil) 
   (save-kb))

Deleted Lysine biosynthesis I and Lysine biosynthesis II



(loop for org in *cyano-orgs* 
   do (so org) 
   (if (framep 'daplysinesyn-pwy) 
      (delete-frame 'daplysinesyn-pwy)) 
   (if (framep 'pwy-2941) 
      (delete-frame 'pwy-2941)) 
   (save-kb))

Linked LL-Diaminopimelate aminotransferase reaction to orthologs of PMM1500


(setq *org-genes* '((MED4 PMED_17101) (MIT9515 P9515_16801) (MIT9313 P9313_22651)
 (SS120 SS120_16911) (MIT9312 P9312_17421) (MIT9303 P9303_23741)
 (MIT9211 P9211_16221) (MIT9301 P9301_16911) (NATL1A NATL1_19411)
 (NATL2A NATL2_18831) (AS9601 A9601_17031)))


(loop for org-gene in *org-genes*
      for org = (first org-gene)
      for gene = (second org-gene)
      do (so org)
      (link-enzymatic-reaction (first (enzymes-of-gene gene))
			        'rxn-7737
				'("LL-DAP-AT" "LL-Diaminopimelate aminotransferase") )
      (save-kb))