Fluxor
From FreeBio
Wiki Documention for on going development of fluxor project. Fluxor is mainly concerned with supporting the development of flux balance models from annotated genomes.
Creator of Fluxor: Jeremy Zucker. Other Authors: Graham Rockwell, Aaron Brandes
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Fluxor Architecture
Graham wants to develop software that uses FBA to support metabolic engineering. Jeremy wants to support the development of metabolic flux models. Aaron Brandes wants to develop new FBA algorithms.
We want to share our code so that we can each meet our individual goals faster.
To organize our code base, the following conventions are followed:
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Data Objects
- Reactions
- Species
- SpeciesReference
- MetabolicNetwork
- FluxModel
- ModelLimits
- ModelObjective
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Readers
- FlatFileParser
- SBMLParser
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Writers
- SBMLWriters
- FlatFileWriter
- Metatool
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Analysis
- RunFBA
- FluxCoupleAnalysis
- OptKnock
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Math
- glpk
- ooqp
- lpsolve
