From FreeBio
abbreviation officialName equation geneAssociation ecocyc-rxn-ids analysis notes
12DGR120tipp "1,2 diacylglycerol transport via flipping ( periplasm to cytoplasm, n-C12:0 )" 12dgr120[p] --> 12dgr120[c]
12DGR140tipp "1,2 diacylglycerol transport via flipping ( periplasm to cytoplasm, n-C14:0 )" 12dgr140[p] --> 12dgr140[c]
12DGR141tipp "1,2 diacylglycerol transport via flipping ( periplasm to cytoplasm, n-C14:1 )" 12dgr141[p] --> 12dgr141[c]
12DGR160tipp "1,2 diacylglycerol transport via flipping ( periplasm to cytoplasm, n-C16:0 )" 12dgr160[p] --> 12dgr160[c]
12DGR161tipp "1,2 diacylglycerol transport via flipping ( periplasm to cytoplasm, n-C16:1 )" 12dgr161[p] --> 12dgr161[c]
12DGR180tipp "1,2 diacylglycerol transport via flipping ( periplasm to cytoplasm, n-C18:0 )" 12dgr180[p] --> 12dgr180[c]
12DGR181tipp "1,2 diacylglycerol transport via flipping ( periplasm to cytoplasm, n-C18:1 )" 12dgr181[p] --> 12dgr181[c]
12PPDStpp "( S )-Propane-1,2-diol facilitated transport ( periplasm )" 12ppd-S[p] <==> 12ppd-S[c]
23DAPPAt2pp "2,3-diaminopropionate transport in via proton symport" 23dappa[p] + h[p] --> 23dappa[c] + h[c]
ACGAL1PPpp N-acetyl-D-galactosamine 1-phosphatase ( periplasm ) [p] : acgal1p + h2o --> acgal + pi
ACGAM1PPpp N-acetyl-D-glucosamine 1-phosphatase ( periplasm ) [p] : acgam1p + h2o --> acgam + pi
ACM6PH N-acetylmuramate 6-phosphate hydrolase [c] : acmum6p + h2o --> acgam6p + lac-D
ACOLIPAtex arabinose modified core oligosaccharide lipid A transport via vector ( periplasm to extracellular ) acolipa[p] --> acolipa[e]
ALDD4 "aldehyde dehydrogenase ( butanal, NAD )" [c] : btal + h2o + nad --> but + ( 2 ) h + nadh
ARBTNtex aerobactin secretion ( to extracellular ) arbtn[p] + h[p] --> arbtn[e] + h[c]
ARBTNtpp aerobactin secretion ( to periplasm ) arbtn[c] + h[p] --> arbtn[p] + h[c]
ASNabcpp L-asparagine transport via ABC system ( periplasm ) asn-L[p] + atp[c] + h2o[c] --> adp[c] + asn-L[c] + h[c] + pi[c]
CLIPAtex cold lipid A transport via vector ( periplasm to extracellular ) lipa_cold[p] --> lipa_cold[e]
CLPNH120pp "cardiolipin hydrolase ( periplasm, n-C12:0 )" [p] : clpn120 + h2o --> h + pa120 + pg120
CLPNH140pp "cardiolipin hydrolase ( periplasm, n-C14:0 )" [p] : clpn140 + h2o --> h + pa140 + pg140
CLPNH141pp "cardiolipin hydrolase ( periplasm, n-C14:1 )" [p] : clpn141 + h2o --> h + pa141 + pg141
CLPNH160pp "cardiolipin hydrolase ( periplasm, n-C16:0 )" [p] : clpn160 + h2o --> h + pa160 + pg160
CLPNH161pp "cardiolipin hydrolase ( periplasm, n-C16:1 )" [p] : clpn161 + h2o --> h + pa161 + pg161
CLPNH180pp "cardiolipin hydrolase ( periplasm, n-C18:0 )" [p] : clpn180 + h2o --> h + pa180 + pg180
CLPNH181pp "cardiolipin hydrolase ( periplasm, n-C18:1 )" [p] : clpn181 + h2o --> h + pa181 + pg181
CMPN CMP nucleosidase [c] : cmp + h2o --> csn + r5p
COLIPAtex core oligosaccharide lipid A transport via vector ( periplasm to extracellular ) colipa[p] --> colipa[e]
CYSabcpp L-cysteine uptake via ABC system ( periplasm ) atp[c] + cys-L[p] + h2o[c] --> adp[c] + cys-L[c] + h[c] + pi[c]
CYSDabcpp D-cysteine uptake via ABC system ( periplasm ) atp[c] + cys-D[p] + h2o[c] --> adp[c] + cys-D[c] + h[c] + pi[c]
DAPabcpp M-diaminopimelic acid ABC transport ( periplasm ) 26dap-M[p] + atp[c] + h2o[c] --> 26dap-M[c] + adp[c] + h[c] + pi[c]
DATPHs dATP spontanous amine hydrolysis [c] : datp + h + h2o --> ditp + nh4
DHAtpp Dihydroxyacetone transport via facilitated diffusion ( periplasm ) dha[p] <==> dha[c]
DHBSH "2,3-dihydroxybenzoylserine hydrolase" [c] : 23dhbzs + h2o --> 23dhb + ser-L
DKMPPD "2,3-diketo-5-methylthio-1-phosphopentane degradation reaction" [c] : dkmpp + h2o + o2 --> 2kmb + for + ( 2 ) h + pi
DKMPPD3 "2,3-diketo-5-methylthio-1-phosphopentane degradation reaction" [c] : dkmpp + ( 3 ) h2o + ( 2 ) nad --> 2kmb + for + ( 4 ) h + ( 2 ) nadh + pi
ENLIPAtex phosphoethanolamine lipid A transport via vector ( periplasm to extracellular ) enlipa[p] --> enlipa[e]
ETHAt2pp ethanolamine transport in via proton symport etha[p] + h[p] --> etha[c] + h[c]
ETOHt2rpp ethanol reversible transport via proton symport ( periplasm ) etoh[p] + h[p] <==> etoh[c] + h[c]
FE3abcpp iron ( III ) transport via ABC system ( periplasm to cytoplasm ) atp[c] + fe3[p] + h2o[c] --> adp[c] + fe3[c] + h[c] + pi[c]
FE3DHBZR "release of Fe( III ) from ferric 2,3-dihydroxybenzoylserine" [c] : fe3dhbzs --> 23dhbzs + fe3
FEENTERexs enterobactin Fe( III ) binding ( spontaneous ) [e] : enter + fe3 --> feenter
FEENTERR1 Fe-enterobactin reduction ( Fe( III )-unloading ) [c] : fadh2 + ( 2 ) feenter --> ( 2 ) enter + fad + ( 2 ) fe2 + ( 2 ) h
FEENTERR2 Fe-enterobactin reduction ( Fe( III )-unloading ) [c] : ( 2 ) feenter + fmnh2 --> ( 2 ) enter + ( 2 ) fe2 + fmn + ( 2 ) h
FEENTERR3 Fe-enterobactin reduction ( Fe( III )-unloading ) [c] : ( 2 ) feenter + rbflvrd --> ( 2 ) enter + ( 2 ) fe2 + ( 2 ) h + ribflv
FEENTERtex enterochelin transport ( secretion periplasm ) enter[p] + h[p] --> enter[e] + h[c]
GTPHs spontaneous GTP amine hydrolysis [c] : gtp + h + h2o --> nh4 + xtp
GUAtpp Guanine transport via diffusion ( periplasm ) gua[p] <==> gua[c]
GUR1PPpp Glucuronate 1-phosphate phosphatase ( periplasm ) [p] : glcur1p + h2o --> glcur + pi
H2SO Hydrogen sulfide oxidation [c] : h2s + ( 2 ) o2 --> ( 2 ) h + so4
HYPOE hypothetical enyme [c] : h2o + pyam5p --> pi + pydam
HYXNtpp Hypoxanthine transport ( periplasm ) hxan[p] <==> hxan[c]
K2L4Atex KDO( 2 )-lipid IV A transport via vector ( periplasm to extracellular ) kdo2lipid4[p] --> kdo2lipid4[e]
METOX1s methionine spontaneous oxidation [c] : h2o2 + met-L --> h2o + metsox-S-L
METSOX1abcpp L-methionine S-oxide transport via ABC system ( periplasm ) atp[c] + h2o[c] + metsox-S-L[p] --> adp[c] + h[c] + metsox-S-L[c] + pi[c]
MINOHPtexi myo-inositol phosphate transport via diffusion ( extracellular to periplasm ) minohp[e] --> minohp[p]
NACtpp Nicotinic acid uptake ( periplasm ) nac[p] --> nac[c]
NMNt7pp NMN transport via NMN glycohydrolase ( periplasm ) h2o[c] + nmn[p] --> h[c] + ncam[c] + r5p[c]
OMMBLHX3 "2-Octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase ( anaerobic )" [c] : 2ommbl + ( 2 ) atp + ( 3 ) h2o + nad --> 2omhmbl + ( 2 ) adp + ( 3 ) h + nadh + ( 2 ) pi
OMPHHX3 2-octaprenyl-6-methoxyphenol hydroxylase ( anaerobic ) [c] : 2omph + ( 2 ) atp + ( 3 ) h2o + nad --> 2ombzl + ( 2 ) adp + ( 3 ) h + nadh + ( 2 ) pi
OPHHX3 2-Octaprenylphenol hydroxylase ( anaerobic ) [c] : 2oph + ( 2 ) atp + ( 3 ) h2o + nad --> 2ohph + ( 2 ) adp + ( 3 ) h + nadh + ( 2 ) pi
PACALDt2rpp phenylacetaldehyde reversible transport via proton symport ( periplasm ) h[p] + pacald[p] <==> h[c] + pacald[c]
PDX5PO2 pyridoxine 5'-phosphate oxidase ( anaerboic [c] : nad + pdx5p --> h + nadh + pydx5p
PDXPP Pyridoxine 5-phosphate phosphatase [c] : h2o + pdx5p --> pi + pydxn
PHEMEtiex protoheme transport irreversible out via diffusion ( periplasm to extracellular ) pheme[p] --> pheme[e]
PPALtpp propanal transport via channel ( periplasm ) ppal[c] <==> ppal[p]
PYRt2rpp pyruvate reversible transport via proton symport ( periplasm ) h[p] + pyr[p] <==> h[c] + pyr[c]
SUCCt3pp succinate transport out via proton antiport ( periplasm ) h[p] + succ[c] --> h[c] + succ[p]
THYMt3pp thymine transport out via proton antiport ( periplasm ) h[p] + thym[c] --> h[c] + thym[p]
UDCPPtppi undecaprenyl phosphate transport ( cytoplasm to periplasm ) udcpp[p] --> udcpp[c]
UNK3 2-keto-4-methylthiobutyrate transamination [c] : 2kmb + glu-L --> akg + met-L
URIC uricase [c] : ( 2 ) h2o + o2 + urate --> alltn + co2 + h2o2
XANtpp xanthine reversible transport ( periplasm ) xan[p] <==> xan[c]
