Debugging the bug/Mapping Gene sets/Category4/category4-rxns-wo-genes.txt

From FreeBio

abbreviation	officialName	equation	geneAssociation	ecocyc-rxn-ids	analysis	notes
12DGR120tipp	"1,2 diacylglycerol transport via flipping ( periplasm to cytoplasm, n-C12:0 )"	12dgr120[p] --> 12dgr120[c]				
12DGR140tipp	"1,2 diacylglycerol transport via flipping ( periplasm to cytoplasm, n-C14:0 )"	12dgr140[p] --> 12dgr140[c]				
12DGR141tipp	"1,2 diacylglycerol transport via flipping ( periplasm to cytoplasm, n-C14:1 )"	12dgr141[p] --> 12dgr141[c]				
12DGR160tipp	"1,2 diacylglycerol transport via flipping ( periplasm to cytoplasm, n-C16:0 )"	12dgr160[p] --> 12dgr160[c]				
12DGR161tipp	"1,2 diacylglycerol transport via flipping ( periplasm to cytoplasm, n-C16:1 )"	12dgr161[p] --> 12dgr161[c]				
12DGR180tipp	"1,2 diacylglycerol transport via flipping ( periplasm to cytoplasm, n-C18:0 )"	12dgr180[p] --> 12dgr180[c]				
12DGR181tipp	"1,2 diacylglycerol transport via flipping ( periplasm to cytoplasm, n-C18:1 )"	12dgr181[p] --> 12dgr181[c]				
12PPDStpp	"( S )-Propane-1,2-diol facilitated transport ( periplasm )"	12ppd-S[p] <==> 12ppd-S[c]				
23DAPPAt2pp	"2,3-diaminopropionate transport in via proton symport"	23dappa[p] + h[p] --> 23dappa[c] + h[c]				
ACGAL1PPpp	N-acetyl-D-galactosamine 1-phosphatase ( periplasm )	[p] : acgal1p + h2o --> acgal + pi				
ACGAM1PPpp	N-acetyl-D-glucosamine 1-phosphatase ( periplasm )	[p] : acgam1p + h2o --> acgam + pi				
ACM6PH	N-acetylmuramate 6-phosphate hydrolase	[c] : acmum6p + h2o --> acgam6p + lac-D				
ACOLIPAtex	arabinose modified core oligosaccharide lipid A transport via vector ( periplasm to extracellular )	acolipa[p] --> acolipa[e]				
ALDD4	"aldehyde dehydrogenase ( butanal, NAD )"	[c] : btal + h2o + nad --> but + ( 2 ) h + nadh				
ARBTNtex	aerobactin secretion ( to extracellular )	arbtn[p] + h[p] --> arbtn[e] + h[c]				
ARBTNtpp	aerobactin secretion ( to periplasm )	arbtn[c] + h[p] --> arbtn[p] + h[c]				
ASNabcpp	L-asparagine transport via ABC system ( periplasm )	asn-L[p] + atp[c] + h2o[c] --> adp[c] + asn-L[c] + h[c] + pi[c]				
CLIPAtex	cold lipid A transport via vector ( periplasm to extracellular )	lipa_cold[p] --> lipa_cold[e]				
CLPNH120pp	"cardiolipin hydrolase ( periplasm, n-C12:0 )"	[p] : clpn120 + h2o --> h + pa120 + pg120				
CLPNH140pp	"cardiolipin hydrolase ( periplasm, n-C14:0 )"	[p] : clpn140 + h2o --> h + pa140 + pg140				
CLPNH141pp	"cardiolipin hydrolase ( periplasm, n-C14:1 )"	[p] : clpn141 + h2o --> h + pa141 + pg141				
CLPNH160pp	"cardiolipin hydrolase ( periplasm, n-C16:0 )"	[p] : clpn160 + h2o --> h + pa160 + pg160				
CLPNH161pp	"cardiolipin hydrolase ( periplasm, n-C16:1 )"	[p] : clpn161 + h2o --> h + pa161 + pg161				
CLPNH180pp	"cardiolipin hydrolase ( periplasm, n-C18:0 )"	[p] : clpn180 + h2o --> h + pa180 + pg180				
CLPNH181pp	"cardiolipin hydrolase ( periplasm, n-C18:1 )"	[p] : clpn181 + h2o --> h + pa181 + pg181				
CMPN	CMP nucleosidase	[c] : cmp + h2o --> csn + r5p				
COLIPAtex	core oligosaccharide lipid A transport via vector ( periplasm to extracellular )	colipa[p] --> colipa[e]				
CYSabcpp	L-cysteine uptake via ABC system ( periplasm )	atp[c] + cys-L[p] + h2o[c] --> adp[c] + cys-L[c] + h[c] + pi[c]				
CYSDabcpp	D-cysteine uptake via ABC system ( periplasm )	atp[c] + cys-D[p] + h2o[c] --> adp[c] + cys-D[c] + h[c] + pi[c]				
DAPabcpp	M-diaminopimelic acid ABC transport ( periplasm )	26dap-M[p] + atp[c] + h2o[c] --> 26dap-M[c] + adp[c] + h[c] + pi[c]				
DATPHs	dATP spontanous amine hydrolysis	[c] : datp + h + h2o --> ditp + nh4				
DHAtpp	Dihydroxyacetone transport via facilitated diffusion ( periplasm )	dha[p] <==> dha[c]				
DHBSH	"2,3-dihydroxybenzoylserine hydrolase"	[c] : 23dhbzs + h2o --> 23dhb + ser-L				
DKMPPD	"2,3-diketo-5-methylthio-1-phosphopentane degradation reaction"	[c] : dkmpp + h2o + o2 --> 2kmb + for + ( 2 ) h + pi				
DKMPPD3	"2,3-diketo-5-methylthio-1-phosphopentane degradation reaction"	[c] : dkmpp + ( 3 ) h2o + ( 2 ) nad --> 2kmb + for + ( 4 ) h + ( 2 ) nadh + pi				
ENLIPAtex	phosphoethanolamine lipid A transport via vector ( periplasm to extracellular )	enlipa[p] --> enlipa[e]				
ETHAt2pp	ethanolamine transport in via proton symport	etha[p] + h[p] --> etha[c] + h[c]				
ETOHt2rpp	ethanol reversible transport via proton symport ( periplasm )	etoh[p] + h[p] <==> etoh[c] + h[c]				
FE3abcpp	iron ( III ) transport via ABC system ( periplasm to cytoplasm )	atp[c] + fe3[p] + h2o[c] --> adp[c] + fe3[c] + h[c] + pi[c]				
FE3DHBZR	"release of Fe( III ) from ferric 2,3-dihydroxybenzoylserine"	[c] : fe3dhbzs --> 23dhbzs + fe3				
FEENTERexs	enterobactin Fe( III ) binding ( spontaneous )	[e] : enter + fe3 --> feenter				
FEENTERR1	Fe-enterobactin reduction ( Fe( III )-unloading )	[c] : fadh2 + ( 2 ) feenter --> ( 2 ) enter + fad + ( 2 ) fe2 + ( 2 ) h				
FEENTERR2	Fe-enterobactin reduction ( Fe( III )-unloading )	[c] : ( 2 ) feenter + fmnh2 --> ( 2 ) enter + ( 2 ) fe2 + fmn + ( 2 ) h				
FEENTERR3	Fe-enterobactin reduction ( Fe( III )-unloading )	[c] : ( 2 ) feenter + rbflvrd --> ( 2 ) enter + ( 2 ) fe2 + ( 2 ) h + ribflv				
FEENTERtex	enterochelin transport ( secretion periplasm )	enter[p] + h[p] --> enter[e] + h[c]				
GTPHs	spontaneous GTP amine hydrolysis	[c] : gtp + h + h2o --> nh4 + xtp				
GUAtpp	Guanine transport via diffusion ( periplasm )	gua[p] <==> gua[c]				
GUR1PPpp	Glucuronate 1-phosphate phosphatase ( periplasm )	[p] : glcur1p + h2o --> glcur + pi				
H2SO	Hydrogen sulfide oxidation	[c] : h2s + ( 2 ) o2 --> ( 2 ) h + so4				
HYPOE	hypothetical enyme	[c] : h2o + pyam5p --> pi + pydam				
HYXNtpp	Hypoxanthine transport ( periplasm )	hxan[p] <==> hxan[c]				
K2L4Atex	KDO( 2 )-lipid IV A transport via vector ( periplasm to extracellular )	kdo2lipid4[p] --> kdo2lipid4[e]				
METOX1s	methionine spontaneous oxidation	[c] : h2o2 + met-L --> h2o + metsox-S-L				
METSOX1abcpp	L-methionine S-oxide transport via ABC system ( periplasm )	atp[c] + h2o[c] + metsox-S-L[p] --> adp[c] + h[c] + metsox-S-L[c] + pi[c]				
MINOHPtexi	myo-inositol phosphate transport via diffusion ( extracellular to periplasm )	minohp[e] --> minohp[p]				
NACtpp	Nicotinic acid uptake ( periplasm )	nac[p] --> nac[c]				
NMNt7pp	NMN transport via NMN glycohydrolase ( periplasm )	h2o[c] + nmn[p] --> h[c] + ncam[c] + r5p[c]				
OMMBLHX3	"2-Octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase ( anaerobic )"	[c] : 2ommbl + ( 2 ) atp + ( 3 ) h2o + nad --> 2omhmbl + ( 2 ) adp + ( 3 ) h + nadh + ( 2 ) pi				
OMPHHX3	2-octaprenyl-6-methoxyphenol hydroxylase ( anaerobic )	[c] : 2omph + ( 2 ) atp + ( 3 ) h2o + nad --> 2ombzl + ( 2 ) adp + ( 3 ) h + nadh + ( 2 ) pi				
OPHHX3	2-Octaprenylphenol hydroxylase ( anaerobic )	[c] : 2oph + ( 2 ) atp + ( 3 ) h2o + nad --> 2ohph + ( 2 ) adp + ( 3 ) h + nadh + ( 2 ) pi				
PACALDt2rpp	phenylacetaldehyde reversible transport via proton symport ( periplasm )	h[p] + pacald[p] <==> h[c] + pacald[c]				
PDX5PO2	pyridoxine 5'-phosphate oxidase ( anaerboic	[c] : nad + pdx5p --> h + nadh + pydx5p				
PDXPP	Pyridoxine 5-phosphate phosphatase	[c] : h2o + pdx5p --> pi + pydxn				
PHEMEtiex	protoheme transport irreversible out via diffusion ( periplasm to extracellular )	pheme[p] --> pheme[e]				
PPALtpp	propanal transport via channel ( periplasm )	ppal[c] <==> ppal[p]				
PYRt2rpp	pyruvate reversible transport via proton symport ( periplasm )	h[p] + pyr[p] <==> h[c] + pyr[c]				
SUCCt3pp	succinate transport out via proton antiport ( periplasm )	h[p] + succ[c] --> h[c] + succ[p]				
THYMt3pp	thymine transport out via proton antiport ( periplasm )	h[p] + thym[c] --> h[c] + thym[p]				
UDCPPtppi	undecaprenyl phosphate transport ( cytoplasm to periplasm )	udcpp[p] --> udcpp[c]				
UNK3	2-keto-4-methylthiobutyrate transamination	[c] : 2kmb + glu-L --> akg + met-L				
URIC	uricase	[c] : ( 2 ) h2o + o2 + urate --> alltn + co2 + h2o2				
XANtpp	xanthine reversible transport ( periplasm )	xan[p] <==> xan[c]