Debugging the bug/Mapping Gene sets/Category4/category4-rxns-wo-genes-transport.txt

From FreeBio

abbreviation	officialName	equation	geneAssociation	ecocyc-rxn-ids	analysis	notes
12DGR120tipp	"1,2 diacylglycerol transport via flipping ( periplasm to cytoplasm, n-C12:0 )"	12dgr120[p] --> 12dgr120[c]				
12DGR140tipp	"1,2 diacylglycerol transport via flipping ( periplasm to cytoplasm, n-C14:0 )"	12dgr140[p] --> 12dgr140[c]				
12DGR141tipp	"1,2 diacylglycerol transport via flipping ( periplasm to cytoplasm, n-C14:1 )"	12dgr141[p] --> 12dgr141[c]				
12DGR160tipp	"1,2 diacylglycerol transport via flipping ( periplasm to cytoplasm, n-C16:0 )"	12dgr160[p] --> 12dgr160[c]				
12DGR161tipp	"1,2 diacylglycerol transport via flipping ( periplasm to cytoplasm, n-C16:1 )"	12dgr161[p] --> 12dgr161[c]				
12DGR180tipp	"1,2 diacylglycerol transport via flipping ( periplasm to cytoplasm, n-C18:0 )"	12dgr180[p] --> 12dgr180[c]				
12DGR181tipp	"1,2 diacylglycerol transport via flipping ( periplasm to cytoplasm, n-C18:1 )"	12dgr181[p] --> 12dgr181[c]				
12PPDStpp	"( S )-Propane-1,2-diol facilitated transport ( periplasm )"	12ppd-S[p] <==> 12ppd-S[c]				
23DAPPAt2pp	"2,3-diaminopropionate transport in via proton symport"	23dappa[p] + h[p] --> 23dappa[c] + h[c]				
ACOLIPAtex	arabinose modified core oligosaccharide lipid A transport via vector ( periplasm to extracellular )	acolipa[p] --> acolipa[e]				
ARBTNtex	aerobactin secretion ( to extracellular )	arbtn[p] + h[p] --> arbtn[e] + h[c]				
ARBTNtpp	aerobactin secretion ( to periplasm )	arbtn[c] + h[p] --> arbtn[p] + h[c]				
ASNabcpp	L-asparagine transport via ABC system ( periplasm )	asn-L[p] + atp[c] + h2o[c] --> adp[c] + asn-L[c] + h[c] + pi[c]				
CLIPAtex	cold lipid A transport via vector ( periplasm to extracellular )	lipa_cold[p] --> lipa_cold[e]				
COLIPAtex	core oligosaccharide lipid A transport via vector ( periplasm to extracellular )	colipa[p] --> colipa[e]				
CYSabcpp	L-cysteine uptake via ABC system ( periplasm )	atp[c] + cys-L[p] + h2o[c] --> adp[c] + cys-L[c] + h[c] + pi[c]				
CYSDabcpp	D-cysteine uptake via ABC system ( periplasm )	atp[c] + cys-D[p] + h2o[c] --> adp[c] + cys-D[c] + h[c] + pi[c]				
DAPabcpp	M-diaminopimelic acid ABC transport ( periplasm )	26dap-M[p] + atp[c] + h2o[c] --> 26dap-M[c] + adp[c] + h[c] + pi[c]				
DHAtpp	Dihydroxyacetone transport via facilitated diffusion ( periplasm )	dha[p] <==> dha[c]				
ENLIPAtex	phosphoethanolamine lipid A transport via vector ( periplasm to extracellular )	enlipa[p] --> enlipa[e]				
ETHAt2pp	ethanolamine transport in via proton symport	etha[p] + h[p] --> etha[c] + h[c]				
ETOHt2rpp	ethanol reversible transport via proton symport ( periplasm )	etoh[p] + h[p] <==> etoh[c] + h[c]				
FE3abcpp	iron ( III ) transport via ABC system ( periplasm to cytoplasm )	atp[c] + fe3[p] + h2o[c] --> adp[c] + fe3[c] + h[c] + pi[c]				
FEENTERtex	enterochelin transport ( secretion periplasm )	enter[p] + h[p] --> enter[e] + h[c]				
GUAtpp	Guanine transport via diffusion ( periplasm )	gua[p] <==> gua[c]				
HYXNtpp	Hypoxanthine transport ( periplasm )	hxan[p] <==> hxan[c]				
K2L4Atex	KDO( 2 )-lipid IV A transport via vector ( periplasm to extracellular )	kdo2lipid4[p] --> kdo2lipid4[e]				
METSOX1abcpp	L-methionine S-oxide transport via ABC system ( periplasm )	atp[c] + h2o[c] + metsox-S-L[p] --> adp[c] + h[c] + metsox-S-L[c] + pi[c]				
MINOHPtexi	myo-inositol phosphate transport via diffusion ( extracellular to periplasm )	minohp[e] --> minohp[p]				
NACtpp	Nicotinic acid uptake ( periplasm )	nac[p] --> nac[c]				
NMNt7pp	NMN transport via NMN glycohydrolase ( periplasm )	h2o[c] + nmn[p] --> h[c] + ncam[c] + r5p[c]				
PACALDt2rpp	phenylacetaldehyde reversible transport via proton symport ( periplasm )	h[p] + pacald[p] <==> h[c] + pacald[c]				
PHEMEtiex	protoheme transport irreversible out via diffusion ( periplasm to extracellular )	pheme[p] --> pheme[e]				
PPALtpp	propanal transport via channel ( periplasm )	ppal[c] <==> ppal[p]				
PYRt2rpp	pyruvate reversible transport via proton symport ( periplasm )	h[p] + pyr[p] <==> h[c] + pyr[c]				
SUCCt3pp	succinate transport out via proton antiport ( periplasm )	h[p] + succ[c] --> h[c] + succ[p]				
THYMt3pp	thymine transport out via proton antiport ( periplasm )	h[p] + thym[c] --> h[c] + thym[p]				
UDCPPtppi	undecaprenyl phosphate transport ( cytoplasm to periplasm )	udcpp[p] --> udcpp[c]				
XANtpp	xanthine reversible transport ( periplasm )	xan[p] <==> xan[c]