Debugging the bug/Mapping Gene sets/Category4/category4-rxns-wo-genes-cytoplasmic.txt

From FreeBio

abbreviation	officialName	equation	geneAssociation	ecocyc-rxn-ids	analysis	notes
ACM6PH	N-acetylmuramate 6-phosphate hydrolase	[c] : acmum6p + h2o --> acgam6p + lac-D				
ALDD4	"aldehyde dehydrogenase ( butanal, NAD )"	[c] : btal + h2o + nad --> but + ( 2 ) h + nadh				
CMPN	CMP nucleosidase	[c] : cmp + h2o --> csn + r5p				
DATPHs	dATP spontanous amine hydrolysis	[c] : datp + h + h2o --> ditp + nh4				
DHBSH	"2,3-dihydroxybenzoylserine hydrolase"	[c] : 23dhbzs + h2o --> 23dhb + ser-L				
DKMPPD	"2,3-diketo-5-methylthio-1-phosphopentane degradation reaction"	[c] : dkmpp + h2o + o2 --> 2kmb + for + ( 2 ) h + pi				
DKMPPD3	"2,3-diketo-5-methylthio-1-phosphopentane degradation reaction"	[c] : dkmpp + ( 3 ) h2o + ( 2 ) nad --> 2kmb + for + ( 4 ) h + ( 2 ) nadh + pi				
FE3DHBZR	"release of Fe( III ) from ferric 2,3-dihydroxybenzoylserine"	[c] : fe3dhbzs --> 23dhbzs + fe3				
FEENTERR1	Fe-enterobactin reduction ( Fe( III )-unloading )	[c] : fadh2 + ( 2 ) feenter --> ( 2 ) enter + fad + ( 2 ) fe2 + ( 2 ) h				
FEENTERR2	Fe-enterobactin reduction ( Fe( III )-unloading )	[c] : ( 2 ) feenter + fmnh2 --> ( 2 ) enter + ( 2 ) fe2 + fmn + ( 2 ) h				
FEENTERR3	Fe-enterobactin reduction ( Fe( III )-unloading )	[c] : ( 2 ) feenter + rbflvrd --> ( 2 ) enter + ( 2 ) fe2 + ( 2 ) h + ribflv				
GTPHs	spontaneous GTP amine hydrolysis	[c] : gtp + h + h2o --> nh4 + xtp				
H2SO	Hydrogen sulfide oxidation	[c] : h2s + ( 2 ) o2 --> ( 2 ) h + so4				
HYPOE	hypothetical enyme	[c] : h2o + pyam5p --> pi + pydam				
METOX1s	methionine spontaneous oxidation	[c] : h2o2 + met-L --> h2o + metsox-S-L				
OMMBLHX3	"2-Octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase ( anaerobic )"	[c] : 2ommbl + ( 2 ) atp + ( 3 ) h2o + nad --> 2omhmbl + ( 2 ) adp + ( 3 ) h + nadh + ( 2 ) pi				
OMPHHX3	2-octaprenyl-6-methoxyphenol hydroxylase ( anaerobic )	[c] : 2omph + ( 2 ) atp + ( 3 ) h2o + nad --> 2ombzl + ( 2 ) adp + ( 3 ) h + nadh + ( 2 ) pi				
OPHHX3	2-Octaprenylphenol hydroxylase ( anaerobic )	[c] : 2oph + ( 2 ) atp + ( 3 ) h2o + nad --> 2ohph + ( 2 ) adp + ( 3 ) h + nadh + ( 2 ) pi				
PDX5PO2	pyridoxine 5'-phosphate oxidase ( anaerboic	[c] : nad + pdx5p --> h + nadh + pydx5p				
PDXPP	Pyridoxine 5-phosphate phosphatase	[c] : h2o + pdx5p --> pi + pydxn				
UNK3	2-keto-4-methylthiobutyrate transamination	[c] : 2kmb + glu-L --> akg + met-L				
URIC	uricase	[c] : ( 2 ) h2o + o2 + urate --> alltn + co2 + h2o2