Biophysics 101 Schedule
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| Revision as of 15:49, 10 November 2005 AlexanderWait (Talk | contribs) Week 8 � Previous diff |
Revision as of 16:01, 10 November 2005 AlexanderWait (Talk | contribs) Move PPT links to "lectures" Next diff → |
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| [[Biophysics 101 Lectures#Week 1 | '''20-Sep-2005 & 22-Sep-2005 lectures''']] | [[Biophysics 101 Lectures#Week 1 | '''20-Sep-2005 & 22-Sep-2005 lectures''']] | ||
| - | *[[User:Geochurch#101 Week 1|George Church]] - [http://arep.med.harvard.edu/gmc/ppt/05a_sep20.ppt 20-Sep PPT slides]; [http://arep.med.harvard.edu/gmc/ppt/05b_sep22.ppt 22-Sep PPT slides]. | + | *[[User:Geochurch#101 Week 1|George Church]] - |
| *[[User:ShawnDouglas#101 Week 1|Shawn Douglas]] - investigate mediawiki upgrade | *[[User:ShawnDouglas#101 Week 1|Shawn Douglas]] - investigate mediawiki upgrade | ||
| - | |||
| *[[User:cgupta#101 Week 1|Chiki Gupta]] - [http://karma.med.harvard.edu/w/index.php?title=User:Cgupta&oldid=1893 started user page] | *[[User:cgupta#101 Week 1|Chiki Gupta]] - [http://karma.med.harvard.edu/w/index.php?title=User:Cgupta&oldid=1893 started user page] | ||
| *[[User:Laxman#101 Week 1|Lakshmanan Iyer]] - move class to Harvard square | *[[User:Laxman#101 Week 1|Lakshmanan Iyer]] - move class to Harvard square | ||
| Line 21: | Line 20: | ||
| [[Biophysics 101 Lectures#Week 2 | '''27-Sep-2005 & 29-Sep-2005 lectures''']] | [[Biophysics 101 Lectures#Week 2 | '''27-Sep-2005 & 29-Sep-2005 lectures''']] | ||
| - | *[[User:Geochurch#101 Week 2|George Church]] - [http://arep.med.harvard.edu/gmc/ppt/05c_sep27.ppt 27-Sep PPT slides]; ''away 29-Sep''. | + | *[[User:Geochurch#101 Week 2|George Church]] - ''away 29-Sep''. |
| *[[User:ShawnDouglas#101 Week 2|Shawn Douglas]] - personalized medicine. | *[[User:ShawnDouglas#101 Week 2|Shawn Douglas]] - personalized medicine. | ||
| *[[User:cgupta#101 Week 2|Chiki Gupta]] - personalized medicine. | *[[User:cgupta#101 Week 2|Chiki Gupta]] - personalized medicine. | ||
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| [[Biophysics 101 Lectures#Week 3 | '''4-Oct-2005 lectures]] | [[Biophysics 101 Lectures#Week 3 | '''4-Oct-2005 lectures]] | ||
| - | *[[User:Geochurch#101 Week 3|George Church]] - [http://arep.med.harvard.edu/gmc/ppt/05d_oct4.ppt 4-Oct PPT slides]; (no 6-Oct PPT slides). | + | *[[User:Geochurch#101 Week 3|George Church]] - |
| *[[User:ShawnDouglas#101 Week 3|Shawn Douglas]] - personalized medicine definition, background. | *[[User:ShawnDouglas#101 Week 3|Shawn Douglas]] - personalized medicine definition, background. | ||
| *[[User:Kaganov#101 Week 3| Mark Kaganovich]] - personalized medicine | *[[User:Kaganov#101 Week 3| Mark Kaganovich]] - personalized medicine | ||
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| [[Biophysics 101 Lectures#Week 4 | '''11-Oct-2005 & 13-Oct-2005 lectures]] | [[Biophysics 101 Lectures#Week 4 | '''11-Oct-2005 & 13-Oct-2005 lectures]] | ||
| - | *[[User:Geochurch#101 Week 4|George Church]] - [http://arep.med.harvard.edu/gmc/ppt/05e_oct11.ppt 11-Oct PPT slides]; [http://arep.med.harvard.edu/gmc/ppt/05f_oct13.ppt 13-Oct PPT slides]; | + | *[[User:Geochurch#101 Week 4|George Church]] - |
| *[[User:ShawnDouglas#101 Week 4|Shawn Douglas]] - | *[[User:ShawnDouglas#101 Week 4|Shawn Douglas]] - | ||
| *[[User:cgupta#101 Week 4|Chiki Gupta]] - [[User:cgupta#Review of “Systems Biology, Proteomics, and the Future of Health Care: Toward Predictive, Preventative, and Personalized Medicine�|Review]] of “Systems Biology, Proteomics, and the Future of Health Care: Toward Predictive, Preventative, and Personalized Medicine� | *[[User:cgupta#101 Week 4|Chiki Gupta]] - [[User:cgupta#Review of “Systems Biology, Proteomics, and the Future of Health Care: Toward Predictive, Preventative, and Personalized Medicine�|Review]] of “Systems Biology, Proteomics, and the Future of Health Care: Toward Predictive, Preventative, and Personalized Medicine� | ||
| Line 82: | Line 81: | ||
| [[Biophysics 101 Lectures#Week 6 | '''25-Oct-2005 & 27-Oct-2005 lectures]] | [[Biophysics 101 Lectures#Week 6 | '''25-Oct-2005 & 27-Oct-2005 lectures]] | ||
| - | *[[User:Geochurch#101 Week 6|George Church]] - [http://arep.med.harvard.edu/gmc/ppt/05g_oct27.ppt 27-Oct PPT slides]; | + | *[[User:Geochurch#101 Week 6|George Church]] - |
| *[[User:ShawnDouglas#101 Week 6|Shawn Douglas]] - | *[[User:ShawnDouglas#101 Week 6|Shawn Douglas]] - | ||
| - | *[[User:cgupta#101 Week 6|Chiki Gupta]] - [http://karma.med.harvard.edu/wiki/Biophysics_101_Lectures#Week_6 ''Scribe for Oct. 25'']; Install and play around with Bioperl; [[User:cgupta#Medical Misdiagnosis|Medical Misdiagnosis Data]] | + | *[[User:cgupta#101 Week 6|Chiki Gupta]] - [[Biophysics_101_Lectures#Week_6 ''Scribe for Oct. 25'']]; Install and play around with Bioperl; [[User:cgupta#Medical Misdiagnosis|Medical Misdiagnosis Data]] |
| *[[User:Laxman#101 Week 6|Lakshmanan Iyer]] - | *[[User:Laxman#101 Week 6|Lakshmanan Iyer]] - | ||
| *[[User:Kaganov#101 Week 6|Mark Kaganovich]] - start outline of project | *[[User:Kaganov#101 Week 6|Mark Kaganovich]] - start outline of project | ||
Revision as of 16:01, 10 November 2005
Contents |
Schedule
September
Week 1 : class organization
20-Sep-2005 & 22-Sep-2005 lectures
- George Church -
- Shawn Douglas - investigate mediawiki upgrade
- Chiki Gupta - started user page
- Lakshmanan Iyer - move class to Harvard square
- Mark Kaganovich -
- Jason Leith - started user page; definitions of complexity and randomness
- Matthew Meisel - started user page; definitions of complexity and randomness
- Morten Sommer - started user page; understanding of 101
- Alexander Wait - wiki curating
- Jeffrey Yip - started user page; links
- Jeremy Zucker -
Week 2 : choose projects; exercise - a quantitative definition of life
27-Sep-2005 & 29-Sep-2005 lectures
- George Church - away 29-Sep.
- Shawn Douglas - personalized medicine.
- Chiki Gupta - personalized medicine.
- Lakshmanan Iyer - new papers to review in 101 Tasks.
- Mark Kaganovich - personalized medicine.
- Jason Leith - new energy sources.
- Matthew Meisel - new energy sources.
- Morten Sommer - new energy sources.
- Alexander Wait - meta definition of "life".
- Jeffrey Yip - personalized medicine; 27-Sep audio recording.
- Jeremy Zucker - new energy sources; "Toward a mathematical definition of "life" by Gregory Chaitin.
October
Week 3 : new energy sources and personalized medicine
- George Church -
- Shawn Douglas - personalized medicine definition, background.
- Mark Kaganovich - personalized medicine
- Chiki Gupta - Issues Facing Personalized Medicines & Stem Cell Basics
- Lakshmanan Iyer - tools for computational biology
- Jason Leith - biodiesel problems and challenges; problems with non-algal sources
- Matthew Meisel - historical aspects of changing energy sources Away 4-Oct
- Morten Sommer - sustainable environmental economics
- Alexander Wait - wiki curation.
- Jeffrey Yip - economics pharma and environment; energy policy
- Jeremy Zucker - reviews metabolic engineering, textbooks etc. Away 4-Oct
Week 4 : biosphere facts
11-Oct-2005 & 13-Oct-2005 lectures
- George Church -
- Shawn Douglas -
- Chiki Gupta - Review of “Systems Biology, Proteomics, and the Future of Health Care: Toward Predictive, Preventative, and Personalized Medicine�
- Lakshmanan Iyer - Away 13-Oct
- Mark Kaganovich - Away 13-Oct Review Systems Biology, Proteomics, etc. article
- Jason Leith - PQ for personalized medicine scale; a few metrics for various fuels
- Matthew Meisel - Personalized Medicine Scale - Away 13-Oct
- Morten Sommer - Metrics for various fuels
- Alexander Wait -
- Jeffrey Yip - Away 11-Oct
- Jeremy Zucker - Reviews Genome-scale models of microbial cells: evaluating the consequences of constraints; Away 13-Oct
Week 5 : project literature review
18-Oct-2005 & 20-Oct-2005 lectures
- George Church - Away 18-Oct
- Shawn Douglas - Away 20-Oct
- Chiki Gupta - PM Project Ideas and review Jeremy's metabolic engineering tutorial
- Lakshmanan Iyer -
- Mark Kaganovich - Project Page, scribe for Oct. 20
- Jason Leith - Comments on D. Lovely bioremediation paper and how it relates to biomass-oil production.
- Matthew Meisel - Energy usage
- Morten Sommer - review Jeremy's metabolic eng. tuturial and the Palsson paper and biodiesel outline
- Alexander Wait -
- Jeffrey Yip - Please add contributions to group projects here
- Jeremy Zucker -
Week 6 : metabolic networks and learning perl
25-Oct-2005 & 27-Oct-2005 lectures
- George Church -
- Shawn Douglas -
- Chiki Gupta - [[Biophysics_101_Lectures#Week_6 Scribe for Oct. 25]]; Install and play around with Bioperl; Medical Misdiagnosis Data
- Lakshmanan Iyer -
- Mark Kaganovich - start outline of project
- Jason Leith - May be late Oct. 25; Updated 101_Background
- Matthew Meisel - Speculation on the long, long-term effects of carbon sequestration
- Morten Sommer - Looking at metabolic data for bilevel optimization - scribe Oct. 27
- Alexander Wait - improve wiki back-end.
- Jeffrey Yip - Note: We need to get a good omnidirectional microphone for conferencing on Google Talk with Jeremy when he is away. A decent set of speakers would be helpful as well.
- Jeremy Zucker -
November
Week 7 : midterm evaluation
1-Nov-2005 & 3-Nov-2005 lectures
- George Church - Away
- Shawn Douglas -
- Chiki Gupta - Review of “Systematic Survey Reveals General Applicability of ‘Guilt-by-Association� within Gene Coexpression Networks�
- Lakshmanan Iyer -
- Mark Kaganovich - Away 3-Nov
- Jason Leith - Scribe for 1 Nov.; Investigation of costs of producting energy from algae vs. oil.
- Matthew Meisel - "Hello DNA" program
- Morten Sommer - Learn some basic perl and pathway tools
- Alexander Wait - set-up personal genomics cluster
- Jeffrey Yip -
- Jeremy Zucker - Away
Week 8
8-Nov-2005 & 10-Nov-2005 lectures
- George Church -
- Shawn Douglas -
- Chiki Gupta - Scribe for Nov. 8
- Lakshmanan Iyer - Away
- Mark Kaganovich - will review both HapMap papers; 10-Nov Away.
- Jason Leith -
- Matthew Meisel -
- Morten Sommer - Things to do with a 1000 Human Genomes?
- Alexander Wait -
- Jeffrey Yip -
- Jeremy Zucker - Away
Week 9
15-Nov-2005 & 17-Nov-2005 lectures
- George Church -
- Shawn Douglas -
- Chiki Gupta -
- Lakshmanan Iyer -
- Mark Kaganovich -
- Jason Leith -
- Matthew Meisel -
- Morten Sommer -
- Alexander Wait -
- Jeffrey Yip -
- Jeremy Zucker - Away 15th and 17th
Week 10
- George Church -
- Shawn Douglas -
- Chiki Gupta -
- Lakshmanan Iyer -
- Mark Kaganovich -
- Jason Leith -
- Matthew Meisel -
- Morten Sommer -
- Alexander Wait - Away
- Jeffrey Yip - (Most Likely) Away
- Jeremy Zucker - Away
Week 11
29-Nov-2005 & 1-Dec-2005 lectures
- George Church -
- Shawn Douglas -
- Chiki Gupta -
- Lakshmanan Iyer -
- Mark Kaganovich -
- Jason Leith -
- Matthew Meisel -
- Morten Sommer -
- Alexander Wait - Away 29-Nov.
- Jeffrey Yip -
- Jeremy Zucker -
December
Week 12
6-Dec-2005 & 8-Dec-2005 lectures
- George Church -
- Shawn Douglas -
- Chiki Gupta -
- Lakshmanan Iyer -
- Mark Kaganovich -
- Jason Leith -
- Matthew Meisel -
- Morten Sommer -
- Alexander Wait -
- Jeffrey Yip -
- Jeremy Zucker -
Week 13 : presentations
13-Dec-2005 & 15-Dec-2005 lectures
- George Church -
- Shawn Douglas -
- Chiki Gupta -
- Lakshmanan Iyer -
- Mark Kaganovich -
- Jason Leith -
- Matthew Meisel -
- Morten Sommer - Away Dec 15
- Alexander Wait -
- Jeffrey Yip -
- Jeremy Zucker -
Week 14 : wrap-up
- George Church -
- Shawn Douglas - Away 20-Dec
- Chiki Gupta -
- Lakshmanan Iyer -
- Mark Kaganovich -
- Jason Leith - Away 20-Dec
- Matthew Meisel -
- Morten Sommer - Away 20-Dec
- Alexander Wait -
- Jeffrey Yip -
- Jeremy Zucker -
